Welcome to the NuGO R-server!

Page contents:

On this page, you can find R/Bioconductor libraries for Unix/Linux and Windows:
1. Bioconductor support libraries for the human and mouse NuGO arrays.
2. Bioconductor annotation libraries for the Affymetrix Gene Titan system.
3. Bioconductor libraries for the MBNI Custom Chip Definition Files (CDFs) for the human and mouse NuGO arrays (cdf, probe, and Entrez gene annotation).
4. For the current MBNI Custom Chip Definition Files (CDFs) release: Bioconductor libraries for human, mouse, and rat species that we support (Entrez gene; also probe and cdf)^*.
5. For the previous MBNI Custom Chip Definition Files (CDFs) release: Bioconductor libraries for human, mouse, and rat species that we support (Entrez gene; also probe and cdf)^*.

^*: For convenience, we mirror the probe and CDF files as provided by MBNI. The annotation libraries are created by ourselves. We provide only the Entrezg libraries, tairg for Arabidopsis, and three mirbase libraries (human, mouse, and rat) for the microRNA chip. Currently, the three mirbase annotation libraries are being prepared and hence not available.

All libraries are intended for R-2.10.x and Bioconductor 2.5. Older libraries are available here.

REMARK: we decided to use the ENTREZ Custom CDF-files for the following reasons:

Most up-to-date.
Corresponds to genes (not transcripts).
Accepted input for follow-up analyses.

Off course, you are free to use one of the other formats, e.g. ENSEMBL, but we do not provide Bioconductor annotation libraries for those custom CDFs yet.

Fast installation

NuGO arrays (Affymetrix):
    source("http://www.bioconductor.org/biocLite.R")
    biocLite(c("nugohs1a520180hsentrezg.db", "nugohs1a520180hsentrezgcdf", "nugohs1a520180hsentrezgprobe"))
    biocLite(c("nugomm1a520177mmentrezg.db", "nugomm1a520177mmentrezgcdf", "nugomm1a520177mmentrezgprobe"))

hs: human microarrays; mm: mouse microarrays, and YES: these libraries are officially supported via Bioconductor!

Custom CDFs:
Please do this if you receive an error message on missing libraries (only the lacking libraries need to be installed):
    source("http://www.bioconductor.org/biocLite.R")
    biocLite(c("org.At.tair.db", "org.Hs.eg.db", "org.Mm.eg.db", "org.Rn.eg.db"))

NuGO arrays (Custom CDF - current):
    install.packages(pkgs = c("nugohs1a520180hsentrezg.db", "nugohs1a520180hsentrezgcdf", "nugohs1a520180hsentrezgprobe"), repos = "http://nugo-r.bioinformatics.nl/bioc")
    install.packages(pkgs = c("nugomm1a520177mmentrezg.db", "nugomm1a520177mmentrezgcdf", "nugomm1a520177mmentrezgprobe"), repos = "http://nugo-r.bioinformatics.nl/bioc")

NuGO arrays (Custom CDF - previous):
    install.packages(pkgs = c("nugohs1a520180hsentrezg.db", "nugohs1a520180hsentrezgcdf", "nugohs1a520180hsentrezgprobe"), repos = "http://nugo-r.bioinformatics.nl/bioc-previous")
    install.packages(pkgs = c("nugomm1a520177mmentrezg.db", "nugomm1a520177mmentrezgcdf", "nugomm1a520177mmentrezgprobe"), repos = "http://nugo-r.bioinformatics.nl/bioc-previous")

Current Custom CDf is version 12.0.0 (27 October 2009). Previous Custom CDF is version 11.0.1 (27 October 2009).
If new Custom CDF libraries are released, the versions will shift up (and the current "previous" repository will be dropped).
Please check the tables below to see whether your chip is supported! Simply use the proper library names in the commands as shown in the examples above.

Manual Installation

Installation instructions

For Windows: download the appropriate .zip-files from the tables below. In RGui, go to Packages => Install package(s) from local zip-files... Browse to the location where you downloaded your .zip-files and select the files you want to install. Done!

For Unix/Linux: download the appropriate .tar.gz files from the tables below. cd to the directory where you downloaded your .tar.gz files and execute the following command (multiple times for multiple .tar.gz files): R CMD INSTALL <your downloaded.tar.gz file>.

Download tables

1. Human and mouse NuGO array support files as provided on the Bioconductor web site (27 October 2009).
Here, also the CDF and PROBE libraries are available for download. To obtain full microarray support, you need to download and install all three libraries for each species!

Affymetrix array type	Linux/Unix	Windows
Human NuGO Array (nugohs1a520180)	nugohs1a520180.db_2.0.0.tar.gz nugohs1a520180cdf_2.0.0.tar.gz nugohs1a520180probe_2.0.0.tar.gz	nugohs1a520180.db_2.0.0.zip nugohs1a520180cdf_2.0.0.zip nugohs1a520180probe_2.0.0.zip
Mouse NuGO Array (nugomm1a520177)	nugomm1a520177.db_2.0.0.tar.gz nugomm1a520177cdf_2.0.0.tar.gz nugomm1a520177probe_2.0.0.tar.gz	nugomm1a520177.db_2.0.0.zip nugomm1a520177cdf_2.0.0.zip nugomm1a520177probe_2.0.0.zip

2. Human and mouse NuGO array support files (VERSION 12.0.0; MBNI Custom CDF; 27 October 2009).
Here, also the CDF and PROBE libraries are available for download. To obtain full microarray support, you need to download and install all three libraries for each species!

Affymetrix array type	Linux/Unix	Windows
Human NuGO array (nugohs1a520180)	nugohs1a520180hsentrezg.db_12.0.1.tar.gz nugohs1a520180hsentrezgcdf_12.0.0.tar.gz nugohs1a520180hsentrezgprobe_12.0.0.tar.gz	nugohs1a520180hsentrezg.db_12.0.1.zip nugohs1a520180hsentrezgcdf_12.0.0.zip nugohs1a520180hsentrezgprobe_12.0.0.zip
Mouse NuGO array (nugomm1a520177)	nugomm1a520177mmentrezg.db_12.0.1.tar.gz nugomm1a520177mmentrezgcdf_12.0.0.tar.gz nugomm1a520177mmentrezgprobe_12.0.0.tar.gz	nugomm1a520177mmentrezg.db_12.0.1.zip nugomm1a520177mmentrezgcdf_12.0.0.zip nugomm1a520177mmentrezgprobe_12.0.0.zip

3. Annotation libraries for the MBNI Custom CDF annotation files (VERSION 12.0.0; updated 27 October 2009).
Here, also the CDF and PROBE libraries are available for download. To obtain full microarray support, you need to download and install all three libraries for each species!

Affymetrix array type	Linux/Unix	Windows
Arabidopsis thaliana (ath1121501attairg)	ath1121501attairg.db_12.0.1.tar.gz ath1121501attairgcdf_12.0.0.tar.gz ath1121501attairgprobe_12.0.0.tar.gz	ath1121501attairg.db_12.0.1.zip ath1121501attairgcdf_12.0.0.zip ath1121501attairgprobe_12.0.0.zip
Arabidopsis thaliana (tilingatsnptilx520433attairg)	tilingatsnptilx520433attairg.db_12.0.1.tar.gz tilingatsnptilx520433attairgcdf_12.0.0.tar.gz tilingatsnptilx520433attairgprobe_12.0.0.tar.gz	tilingatsnptilx520433attairg.db_12.0.1.zip tilingatsnptilx520433attairgcdf_12.0.0.zip tilingatsnptilx520433attairgprobe_12.0.0.zip
Homo sapiens hgfocus	hgfocushsentrezg.db_12.0.1.tar.gz hgfocushsentrezgcdf_12.0.0.tar.gz hgfocushsentrezgprobe_12.0.0.tar.gz	hgfocushsentrezg.db_12.0.1.zip hgfocushsentrezgcdf_12.0.0.zip hgfocushsentrezgprobe_12.0.0.zip
Homo sapiens hgu133a2	hgu133a2hsentrezg.db_12.0.1.tar.gz hgu133a2hsentrezgcdf_12.0.0.tar.gz hgu133a2hsentrezgprobe_12.0.0.tar.gz	hgu133a2hsentrezg.db_12.0.1.zip hgu133a2hsentrezgcdf_12.0.0.zip hgu133a2hsentrezgprobe_12.0.0.zip
Homo sapiens hgu133a	hgu133ahsentrezg.db_12.0.1.tar.gz hgu133ahsentrezgcdf_12.0.0.tar.gz hgu133ahsentrezgprobe_12.0.0.tar.gz	hgu133ahsentrezg.db_12.0.1.zip hgu133ahsentrezgcdf_12.0.0.zip hgu133ahsentrezgprobe_12.0.0.zip
Homo sapiens hthgu133a (GeneTitan plates)	hthgu133ahsentrezg.db_12.0.1.tar.gz hthgu133ahsentrezgcdf_12.0.0.tar.gz hthgu133ahsentrezgprobe_12.0.0.tar.gz	hthgu133ahsentrezg.db_12.0.1.zip hthgu133ahsentrezgcdf_12.0.0.zip hthgu133ahsentrezgprobe_12.0.0.zip
Homo Sapiens hgu133b	hgu133bhsentrezg.db_12.0.1.tar.gz hgu133bhsentrezgcdf_12.0.0.tar.gz hgu133bhsentrezgprobe_12.0.0.tar.gz	hgu133bhsentrezg.db_12.0.1.zip hgu133bhsentrezgcdf_12.0.0.zip hgu133bhsentrezgprobe_12.0.0.zip
Homo sapiens hthgu133b (GeneTitan plates)	hthgu133bhsentrezg.db_12.0.1.tar.gz hthgu133bhsentrezgcdf_12.0.0.tar.gz hthgu133bhsentrezgprobe_12.0.0.tar.gz	hthgu133bhsentrezg.db_12.0.1.zip ht hgu133bhsentrezgcdf_12.0.0.zip hthgu133bhsentrezgprobe_12.0.0.zip
Homo Sapiens hgu133plus2	hgu133plus2hsentrezg.db_12.0.1.tar.gz hgu133plus2hsentrezgcdf_12.0.0.tar.gz hgu133plus2hsentrezgprobe_12.0.0.tar.gz	hgu133plus2hsentrezg.db_12.0.1.zip hgu133plus2hsentrezgcdf_12.0.0.zip hgu133plus2hsentrezgprobe_12.0.0.zip
Homo sapiens hthgu133pluspm (GeneTitan plates)	hthgu133pluspmhsentrezg.db_12.0.1.tar.gz hthgu133pluspmhsentrezgcdf_12.0.0.tar.gz hthgu133pluspmhsentrezgprobe_12.0.0.tar.gz	hthgu133pluspmhsentrezg.db_12.0.1.zip hthgu133pluspmhsentrezgcdf_12.0.0.zip hthgu133pluspmhsentrezgprobe_12.0.0.zip
Homo Sapiens hgu95av2	hgu95av2hsentrezg.db_12.0.1.tar.gz hgu95av2hsentrezgcdf_12.0.0.tar.gz hgu95av2hsentrezgprobe_12.0.0.tar.gz	hgu95av2hsentrezg.db_12.0.1.zip hgu95av2hsentrezgcdf_12.0.0.zip hgu95av2hsentrezgprobe_12.0.0.zip
Homo Sapiens hgu95b	hgu95bhsentrezg.db_12.0.1.tar.gz hgu95bhsentrezgcdf_12.0.0.tar.gz hgu95bhsentrezgprobe_12.0.0.tar.gz	hgu95bhsentrezg.db_12.0.1.zip hgu95bhsentrezgcdf_12.0.0.zip hgu95bhsentrezgprobe_12.0.0.zip
Homo Sapiens hgu95c	hgu95chsentrezg.db_12.0.1.tar.gz hgu95chsentrezgcdf_12.0.0.tar.gz hgu95chsentrezgprobe_12.0.0.tar.gz	hgu95chsentrezg.db_12.0.1.zip hgu95chsentrezgcdf_12.0.0.zip hgu95chsentrezgprobe_12.0.0.zip
Homo Sapiens hgu95d	hgu95dhsentrezg.db_12.0.1.tar.gz hgu95dhsentrezgcdf_12.0.0.tar.gz hgu95dhsentrezgprobe_12.0.0.tar.gz	hgu95dhsentrezg.db_12.0.1.zip hgu95dhsentrezgcdf_12.0.0.zip hgu95dhsentrezgprobe_12.0.0.zip
Homo Sapiens hgu95e	hgu95ehsentrezg.db_12.0.1.tar.gz hgu95ehsentrezgcdf_12.0.0.tar.gz hgu95ehsentrezgprobe_12.0.0.tar.gz	hgu95ehsentrezg.db_12.0.1.zip hgu95ehsentrezgcdf_12.0.0.zip hgu95ehsentrezgprobe_12.0.0.zip
Homo sapiens 133x3p	u133x3phsentrezg.db_12.0.1.tar.gz u133x3phsentrezgcdf_12.0.0.tar.gz u133x3phsentrezgprobe_12.0.0.tar.gz	u133x3phsentrezg.db_12.0.1.zip u133x3phsentrezgcdf_12.0.0.zip u133x3phsentrezgprobe_12.0.0.zip
Homo sapiens hugene10stv1	hugene10stv1hsentrezg.db_12.0.1.tar.gz hugene10stv1hsentrezgcdf_12.0.0.tar.gz hugene10stv1hsentrezgprobe_12.0.0.tar.gz	hugene10stv1hsentrezg.db_12.0.1.zip hugene10stv1hsentrezgcdf_12.0.0.zip hugene10stv1hsentrezgprobe_12.0.0.zip
Homo sapiens huex10stv2	huex10stv2hsentrezg.db_12.0.1.tar.gz huex10stv2hsentrezgcdf_12.0.0.tar.gz huex10stv2hsentrezgprobe_12.0.0.tar.gz	huex10stv2hsentrezg.db_12.0.1.zip huex10stv2hsentrezgcdf_12.0.0.zip huex10stv2hsentrezgprobe_12.0.0.zip
Homo sapiens miRNA10	<in preparation> mirna10hsmirbasegcdf_12.0.0.tar.gz mirna10hsmirbasegprobe_12.0.0.tar.gz	<in preparation> mirna10hsmirbasegcdf_12.0.0.zip mirna10hsmirbasegprobe_12.0.0.zip
Mus musculus mgu74av2	mgu74av2mmentrezg.db_12.0.1.tar.gz mgu74av2mmentrezgcdf_12.0.0.tar.gz mgu74av2mmentrezgprobe_12.0.0.tar.gz	mgu74av2mmentrezg.db_12.0.1.zip mgu74av2mmentrezgcdf_12.0.0.zip mgu74av2mmentrezgprobe_12.0.0.zip
Mus musculus mgu74bv2	mgu74bv2mmentrezg.db_12.0.1.tar.gz mgu74bv2mmentrezgcdf_12.0.0.tar.gz mgu74bv2mmentrezgprobe_12.0.0.tar.gz	mgu74bv2mmentrezg.db_12.0.1.zip mgu74bv2mmentrezgcdf_12.0.0.zip mgu74bv2mmentrezgprobe_12.0.0.zip
Mus musculus mgu74cv2	mgu74cv2mmentrezg.db_12.0.1.tar.gz mgu74cv2mmentrezgcdf_12.0.0.tar.gz mgu74cv2mmentrezgprobe_12.0.0.tar.gz	mgu74cv2mmentrezg.db_12.0.1.zip mgu74cv2mmentrezgcdf_12.0.0.zip mgu74cv2mmentrezgprobe_12.0.0.zip
Mus musculus moe430a	moe430ammentrezg.db_12.0.1.tar.gz moe430ammentrezgcdf_12.0.0.tar.gz moe430ammentrezgprobe_12.0.0.tar.gz	moe430ammentrezg.db_12.0.1.zip moe430ammentrezgcdf_12.0.0.zip moe430ammentrezgprobe_12.0.0.zip
Mus musculus htmg430a (GeneTitan plates)	htmg430ammentrezg.db_12.0.1.tar.gz htmg430ammentrezgcdf_12.0.0.tar.gz htmg430ammentrezgprobe_12.0.0.tar.gz	htmg430ammentrezg.db_12.0.1.zip htmg430ammentrezgcdf_12.0.0.zip htmg430ammentrezgprobe_12.0.0.zip
Mus musculus moe430b	moe430bmmentrezg.db_12.0.1.tar.gz moe430bmmentrezgcdf_12.0.0.tar.gz moe430bmmentrezgprobe_12.0.0.tar.gz	moe430bmmentrezg.db_12.0.1.zip moe430bmmentrezgcdf_12.0.0.zip moe430bmmentrezgprobe_12.0.0.zip
Mus musculus htmg430b (GeneTitan plates)	htmg430bmmentrezg.db_12.0.1.tar.gz htmg430bmmentrezgcdf_12.0.0.tar.gz htmg430bmmentrezgprobe_12.0.0.tar.gz	htmg430bmmentrezg.db_12.0.1.zip htmg430bmmentrezgcdf_12.0.0.zip htmg430bmmentrezgprobe_12.0.0.zip
Mus musculus moe430a2	mouse430a2mmentrezg.db_12.0.1.tar.gz mouse430a2mmentrezgcdf_12.0.0.tar.gz mouse430a2mmentrezgprobe_12.0.0.tar.gz	mouse430a2mmentrezg.db_12.0.1.zip mouse430a2mmentrezgcdf_12.0.0.zip mouse430a2mmentrezgprobe_12.0.0.zip
Mus musculus mouse4302	mouse4302mmentrezg.db_12.0.1.tar.gz mouse4302mmentrezgcdf_12.0.0.tar.gz mouse4302mmentrezgprobe_12.0.0.tar.gz	mouse4302mmentrezg.db_12.0.1.zip mouse4302mmentrezgcdf_12.0.0.zip mouse4302mmentrezgprobe_12.0.0.zip
Mus musculus htmg430pm (GeneTitan plates)	htmg430pmmmentrezg.db_12.0.1.tar.gz htmg430pmmmentrezgcdf_12.0.0.tar.gz htmg430pmmmentrezgprobe_12.0.0.tar.gz	htmg430pmmmentrezg.db_12.0.1.zip htmg430pmmmentrezgcdf_12.0.0.zip htmg430pmmmentrezgprobe_12.0.0.zip
Mus musculus mogene10stv1	mogene10stv1mmentrezg.db_12.0.1.tar.gz mogene10stv1mmentrezgcdf_12.0.0.tar.gz mogene10stv1mmentrezgprobe_12.0.0.tar.gz	mogene10stv1mmentrezg.db_12.0.1.zip mogene10stv1mmentrezgcdf_12.0.0.zip mogene10stv1mmentrezgprobe_12.0.0.zip
Mus musculus moex10stv1	moex10stv1mmentrezg.db_12.0.1.tar.gz moex10stv1mmentrezgcdf_12.0.0.tar.gz moex10stv1mmentrezgprobe_12.0.0.tar.gz	moex10stv1mmentrezg.db_12.0.1.zip moex10stv1mmentrezgcdf_12.0.0.zip moex10stv1mmentrezgprobe_12.0.0.zip
Mus musculus miRNA10	<in preparation> mirna10mmmirbasegcdf_12.0.0.tar.gz mirna10mmmirbasegprobe_12.0.0.tar.gz	<in preparation> mirna10mmmirbasegcdf_12.0.0.zip mirna10mmmirbasegprobe_12.0.0.zip
Rattus norvegicus rae230a	rae230arnentrezg.db_12.0.1.tar.gz rae230arnentrezgcdf_12.0.0.tar.gz rae230arnentrezgprobe_12.0.0.tar.gz	rae230arnentrezg.db_12.0.1.zip rae230arnentrezgcdf_12.0.0.zip rae230arnentrezgprobe_12.0.0.zip
Rattus norvegicus rae230b	rae230brnentrezg.db_12.0.1.tar.gz rae230brnentrezgcdf_12.0.0.tar.gz rae230brnentrezgprobe_12.0.0.tar.gz	rae230brnentrezg.db_12.0.1.zip rae230brnentrezgcdf_12.0.0.zip rae230brnentrezgprobe_12.0.0.zip
Rattus norvegicus rat2302	rat2302rnentrezg.db_12.0.1.tar.gz rat2302rnentrezgcdf_12.0.0.tar.gz rat2302rnentrezgprobe_12.0.0.tar.gz	rat2302rnentrezg.db_12.0.1.zip rat2302rnentrezgcdf_12.0.0.zip rat2302rnentrezgprobe_12.0.0.zip
Rattus norvegicus htrat230pm (GeneTitan plates)	htrat230pmrnentrezg.db_12.0.1.tar.gz htrat230pmrnentrezgcdf_12.0.0.tar.gz htrat230pmrnentrezgprobe_12.0.0.tar.gz	htrat230pmrnentrezg.db_12.0.1.zip htrat230pmrnentrezgcdf_12.0.0.zip htrat230pmrnentrezgprobe_12.0.0.zip
Rattus norvegicus rgu34a	rgu34arnentrezg.db_12.0.1.tar.gz rgu34arnentrezgcdf_12.0.0.tar.gz rgu34arnentrezgprobe_12.0.0.tar.gz	rgu34arnentrezg.db_12.0.1.zip rgu34arnentrezgcdf_12.0.0.zip rgu34arnentrezgprobe_12.0.0.zip
Rattus norvegicus rgu34b	rgu34brnentrezg.db_12.0.1.tar.gz rgu34brnentrezgcdf_12.0.0.tar.gz rgu34brnentrezgprobe_12.0.0.tar.gz	rgu34brnentrezg.db_12.0.1.zip rgu34brnentrezgcdf_12.0.0.zip rgu34brnentrezgprobe_12.0.0.zip
Rattus norvegicus rgu34c	rgu34crnentrezg.db_12.0.1.tar.gz rgu34crnentrezgcdf_12.0.0.tar.gz rgu34crnentrezgprobe_12.0.0.tar.gz	rgu34crnentrezg.db_12.0.1.zip rgu34crnentrezgcdf_12.0.0.zip rgu34crnentrezgprobe_12.0.0.zip
Rattus norvegicus ragene10stv1	ragene10stv1rnentrezg.db_12.0.1.tar.gz ragene10stv1rnentrezgcdf_12.0.0.tar.gz ragene10stv1rnentrezgprobe_12.0.0.tar.gz	ragene10stv1rnentrezg.db_12.0.1.zip ragene10stv1rnentrezgcdf_12.0.0.zip ragene10stv1rnentrezgprobe_12.0.0.zip
Rattus norvegicus raex10stv1	raex10stv1rnentrezg.db_12.0.1.tar.gz raex10stv1rnentrezgcdf_12.0.0.tar.gz raex10stv1rnentrezgprobe_12.0.0.tar.gz	raex10stv1rnentrezg.db_12.0.1.zip raex10stv1rnentrezgcdf_12.0.0.zip raex10stv1rnentrezgprobe_12.0.0.zip
Rattus norvegicus htratfocus (GeneTitan plates)	htratfocusrnentrezg.db_12.0.1.tar.gz htratfocusrnentrezgcdf_12.0.0.tar.gz htratfocusrnentrezgprobe_12.0.0.tar.gz	htratfocusrnentrezg.db_12.0.1.zip htratfocusrnentrezgcdf_12.0.0.zip htratfocusrnentrezgprobe_12.0.0.zip
Rattus norvegicus miRNA10	<in preparation> mirna10rnmirbasegcdf_12.0.0.tar.gz mirna10rnmirbasegprobe_12.0.0.tar.gz	<in preparation> mirna10rnmirbasegcdf_12.0.0.zip mirna10rnmirbasegprobe_12.0.0.zip

4. Human and mouse NuGO array support files (VERSION 11.0.1; MBNI Custom CDF; 28 October 2009).
Here, also the CDF and PROBE libraries are available for download. To obtain full microarray support, you need to download and install all three libraries for each species!

Affymetrix array type	Linux/Unix	Windows
Human NuGO array (nugohs1a520180)	nugohs1a520180hsentrezg.db_11.0.4.tar.gz nugohs1a520180hsentrezgcdf_11.0.1.tar.gz nugohs1a520180hsentrezgprobe_11.0.1.tar.gz	nugohs1a520180hsentrezg.db_11.0.4.zip nugohs1a520180hsentrezgcdf_11.0.1.zip nugohs1a520180hsentrezgprobe_11.0.1.zip
Mouse NuGO array (nugomm1a520177)	nugomm1a520177mmentrezg.db_11.0.4.tar.gz nugomm1a520177mmentrezgcdf_11.0.1.tar.gz nugomm1a520177mmentrezgprobe_11.0.1.tar.gz	nugomm1a520177mmentrezg.db_11.0.4.zip nugomm1a520177mmentrezgcdf_11.0.1.zip nugomm1a520177mmentrezgprobe_11.0.1.zip

5. Annotation libraries for the MBNI Custom CDF annotation files (VERSION 11.0.1; updated 28 October 2009).
Here, also the CDF and PROBE libraries are available for download. To obtain full microarray support, you need to download and install all three libraries for each species!

Affymetrix array type	Linux/Unix	Windows
Arabidopsis thaliana (ath1121501attairg)	ath1121501attairg.db_11.0.4.tar.gz ath1121501attairgcdf_11.0.1.tar.gz ath1121501attairgprobe_11.0.1.tar.gz	ath1121501attairg.db_11.0.4.zip ath1121501attairgcdf_11.0.1.zip ath1121501attairgprobe_11.0.1.zip
Homo sapiens hgfocus	hgfocushsentrezg.db_11.0.4.tar.gz hgfocushsentrezgcdf_11.0.1.tar.gz hgfocushsentrezgprobe_11.0.1.tar.gz	hgfocushsentrezg.db_11.0.4.zip hgfocushsentrezgcdf_11.0.1.zip hgfocushsentrezgprobe_11.0.1.zip
Homo sapiens hgu133a2	hgu133a2hsentrezg.db_11.0.4.tar.gz hgu133a2hsentrezgcdf_11.0.1.tar.gz hgu133a2hsentrezgprobe_11.0.1.tar.gz	hgu133a2hsentrezg.db_11.0.4.zip hgu133a2hsentrezgcdf_11.0.1.zip hgu133a2hsentrezgprobe_11.0.1.zip
Homo sapiens hgu133a	hgu133ahsentrezg.db_11.0.4.tar.gz hgu133ahsentrezgcdf_11.0.1.tar.gz hgu133ahsentrezgprobe_11.0.1.tar.gz	hgu133ahsentrezg.db_11.0.4.zip hgu133ahsentrezgcdf_11.0.1.zip hgu133ahsentrezgprobe_11.0.1.zip
Homo sapiens hthgu133a (GeneTitan plates)	hthgu133ahsentrezg.db_11.0.4.tar.gz hthgu133ahsentrezgcdf_11.0.1.tar.gz hthgu133ahsentrezgprobe_11.0.1.tar.gz	hthgu133ahsentrezg.db_11.0.4.zip hthgu133ahsentrezgcdf_11.0.1.zip hthgu133ahsentrezgprobe_11.0.1.zip
Homo Sapiens hgu133b	hgu133bhsentrezg.db_11.0.4.tar.gz hgu133bhsentrezgcdf_11.0.1.tar.gz hgu133bhsentrezgprobe_11.0.1.tar.gz	hgu133bhsentrezg.db_11.0.4.zip hgu133bhsentrezgcdf_11.0.1.zip hgu133bhsentrezgprobe_11.0.1.zip
Homo sapiens hthgu133b (GeneTitan plates)	hthgu133bhsentrezg.db_11.0.4.tar.gz hthgu133bhsentrezgcdf_11.0.1.tar.gz hthgu133bhsentrezgprobe_11.0.1.tar.gz	hthgu133bhsentrezg.db_11.0.4.zip ht hgu133bhsentrezgcdf_11.0.1.zip hthgu133bhsentrezgprobe_11.0.1.zip
Homo Sapiens hgu133plus2	hgu133plus2hsentrezg.db_11.0.4.tar.gz hgu133plus2hsentrezgcdf_11.0.1.tar.gz hgu133plus2hsentrezgprobe_11.0.1.tar.gz	hgu133plus2hsentrezg.db_11.0.4.zip hgu133plus2hsentrezgcdf_11.0.1.zip hgu133plus2hsentrezgprobe_11.0.1.zip
Homo Sapiens hgu95av2	hgu95av2hsentrezg.db_11.0.4.tar.gz hgu95av2hsentrezgcdf_11.0.1.tar.gz hgu95av2hsentrezgprobe_11.0.1.tar.gz	hgu95av2hsentrezg.db_11.0.4.zip hgu95av2hsentrezgcdf_11.0.1.zip hgu95av2hsentrezgprobe_11.0.1.zip
Homo Sapiens hgu95b	hgu95bhsentrezg.db_11.0.4.tar.gz hgu95bhsentrezgcdf_11.0.1.tar.gz hgu95bhsentrezgprobe_11.0.1.tar.gz	hgu95bhsentrezg.db_11.0.4.zip hgu95bhsentrezgcdf_11.0.1.zip hgu95bhsentrezgprobe_11.0.1.zip
Homo Sapiens hgu95c	hgu95chsentrezg.db_11.0.4.tar.gz hgu95chsentrezgcdf_11.0.1.tar.gz hgu95chsentrezgprobe_11.0.1.tar.gz	hgu95chsentrezg.db_11.0.4.zip hgu95chsentrezgcdf_11.0.1.zip hgu95chsentrezgprobe_11.0.1.zip
Homo Sapiens hgu95d	hgu95dhsentrezg.db_11.0.4.tar.gz hgu95dhsentrezgcdf_11.0.1.tar.gz hgu95dhsentrezgprobe_11.0.1.tar.gz	hgu95dhsentrezg.db_11.0.4.zip hgu95dhsentrezgcdf_11.0.1.zip hgu95dhsentrezgprobe_11.0.1.zip
Homo Sapiens hgu95e	hgu95ehsentrezg.db_11.0.4.tar.gz hgu95ehsentrezgcdf_11.0.1.tar.gz hgu95ehsentrezgprobe_11.0.1.tar.gz	hgu95ehsentrezg.db_11.0.4.zip hgu95ehsentrezgcdf_11.0.1.zip hgu95ehsentrezgprobe_11.0.1.zip
Homo sapiens 133x3p	u133x3phsentrezg.db_11.0.4.tar.gz u133x3phsentrezgcdf_11.0.1.tar.gz u133x3phsentrezgprobe_11.0.1.tar.gz	u133x3phsentrezg.db_11.0.4.zip u133x3phsentrezgcdf_11.0.1.zip u133x3phsentrezgprobe_11.0.1.zip
Homo sapiens hugene10stv1	hugene10stv1hsentrezg.db_11.0.4.tar.gz hugene10stv1hsentrezgcdf_11.0.1.tar.gz hugene10stv1hsentrezgprobe_11.0.1.tar.gz	hugene10stv1hsentrezg.db_11.0.4.zip hugene10stv1hsentrezgcdf_11.0.1.zip hugene10stv1hsentrezgprobe_11.0.1.zip
Homo sapiens huex10stv2	huex10stv2hsentrezg.db_11.0.4.tar.gz huex10stv2hsentrezgcdf_11.0.1.tar.gz huex10stv2hsentrezgprobe_11.0.1.tar.gz	huex10stv2hsentrezg.db_11.0.4.zip huex10stv2hsentrezgcdf_11.0.1.zip huex10stv2hsentrezgprobe_11.0.1.zip
Mus musculus mgu74av2	mgu74av2mmentrezg.db_11.0.4.tar.gz mgu74av2mmentrezgcdf_11.0.1.tar.gz mgu74av2mmentrezgprobe_11.0.1.tar.gz	mgu74av2mmentrezg.db_11.0.4.zip mgu74av2mmentrezgcdf_11.0.1.zip mgu74av2mmentrezgprobe_11.0.1.zip
Mus musculus mgu74bv2	mgu74bv2mmentrezg.db_11.0.4.tar.gz mgu74bv2mmentrezgcdf_11.0.1.tar.gz mgu74bv2mmentrezgprobe_11.0.1.tar.gz	mgu74bv2mmentrezg.db_11.0.4.zip mgu74bv2mmentrezgcdf_11.0.1.zip mgu74bv2mmentrezgprobe_11.0.1.zip
Mus musculus mgu74cv2	mgu74cv2mmentrezg.db_11.0.4.tar.gz mgu74cv2mmentrezgcdf_11.0.1.tar.gz mgu74cv2mmentrezgprobe_11.0.1.tar.gz	mgu74cv2mmentrezg.db_11.0.4.zip mgu74cv2mmentrezgcdf_11.0.1.zip mgu74cv2mmentrezgprobe_11.0.1.zip
Mus musculus moe430a	moe430ammentrezg.db_11.0.4.tar.gz moe430ammentrezgcdf_11.0.1.tar.gz moe430ammentrezgprobe_11.0.1.tar.gz	moe430ammentrezg.db_11.0.4.zip moe430ammentrezgcdf_11.0.1.zip moe430ammentrezgprobe_11.0.1.zip
Mus musculus htmg430a (GeneTitan plates)	htmg430ammentrezg.db_11.0.4.tar.gz htmg430ammentrezgcdf_11.0.1.tar.gz htmg430ammentrezgprobe_11.0.1.tar.gz	htmg430ammentrezg.db_11.0.4.zip htmg430ammentrezgcdf_11.0.1.zip htmg430ammentrezgprobe_11.0.1.zip
Mus musculus moe430b	moe430bmmentrezg.db_11.0.4.tar.gz moe430bmmentrezgcdf_11.0.1.tar.gz moe430bmmentrezgprobe_11.0.1.tar.gz	moe430bmmentrezg.db_11.0.4.zip moe430bmmentrezgcdf_11.0.1.zip moe430bmmentrezgprobe_11.0.1.zip
Mus musculus htmg430b (GeneTitan plates)	htmg430bmmentrezg.db_11.0.4.tar.gz htmg430bmmentrezgcdf_11.0.1.tar.gz htmg430bmmentrezgprobe_11.0.1.tar.gz	htmg430bmmentrezg.db_11.0.4.zip htmg430bmmentrezgcdf_11.0.1.zip htmg430bmmentrezgprobe_11.0.1.zip
Mus musculus moe430a2	mouse430a2mmentrezg.db_11.0.4.tar.gz mouse430a2mmentrezgcdf_11.0.1.tar.gz mouse430a2mmentrezgprobe_11.0.1.tar.gz	mouse430a2mmentrezg.db_11.0.4.zip mouse430a2mmentrezgcdf_11.0.1.zip mouse430a2mmentrezgprobe_11.0.1.zip
Mus musculus mouse4302	mouse4302mmentrezg.db_11.0.4.tar.gz mouse4302mmentrezgcdf_11.0.1.tar.gz mouse4302mmentrezgprobe_11.0.1.tar.gz	mouse4302mmentrezg.db_11.0.4.zip mouse4302mmentrezgcdf_11.0.1.zip mouse4302mmentrezgprobe_11.0.1.zip
Mus musculus mogene10stv1	mogene10stv1mmentrezg.db_11.0.4.tar.gz mogene10stv1mmentrezgcdf_11.0.1.tar.gz mogene10stv1mmentrezgprobe_11.0.1.tar.gz	mogene10stv1mmentrezg.db_11.0.4.zip mogene10stv1mmentrezgcdf_11.0.1.zip mogene10stv1mmentrezgprobe_11.0.1.zip
Mus musculus moex10stv1	moex10stv1mmentrezg.db_11.0.4.tar.gz moex10stv1mmentrezgcdf_11.0.1.tar.gz moex10stv1mmentrezgprobe_11.0.1.tar.gz	moex10stv1mmentrezg.db_11.0.4.zip moex10stv1mmentrezgcdf_11.0.1.zip moex10stv1mmentrezgprobe_11.0.1.zip
Rattus norvegicus rae230a	rae230arnentrezg.db_11.0.4.tar.gz rae230arnentrezgcdf_11.0.1.tar.gz rae230arnentrezgprobe_11.0.1.tar.gz	rae230arnentrezg.db_11.0.4.zip rae230arnentrezgcdf_11.0.1.zip rae230arnentrezgprobe_11.0.1.zip
Rattus norvegicus rae230b	rae230brnentrezg.db_11.0.4.tar.gz rae230brnentrezgcdf_11.0.1.tar.gz rae230brnentrezgprobe_11.0.1.tar.gz	rae230brnentrezg.db_11.0.4.zip rae230brnentrezgcdf_11.0.1.zip rae230brnentrezgprobe_11.0.1.zip
Rattus norvegicus rat2302	rat2302rnentrezg.db_11.0.4.tar.gz rat2302rnentrezgcdf_11.0.1.tar.gz rat2302rnentrezgprobe_11.0.1.tar.gz	rat2302rnentrezg.db_11.0.4.zip rat2302rnentrezgcdf_11.0.1.zip rat2302rnentrezgprobe_11.0.1.zip
Rattus norvegicus rgu34a	rgu34arnentrezg.db_11.0.4.tar.gz rgu34arnentrezgcdf_11.0.1.tar.gz rgu34arnentrezgprobe_11.0.1.tar.gz	rgu34arnentrezg.db_11.0.4.zip rgu34arnentrezgcdf_11.0.1.zip rgu34arnentrezgprobe_11.0.1.zip
Rattus norvegicus rgu34b	rgu34brnentrezg.db_11.0.4.tar.gz rgu34brnentrezgcdf_11.0.1.tar.gz rgu34brnentrezgprobe_11.0.1.tar.gz	rgu34brnentrezg.db_11.0.4.zip rgu34brnentrezgcdf_11.0.1.zip rgu34brnentrezgprobe_11.0.1.zip
Rattus norvegicus rgu34c	rgu34crnentrezg.db_11.0.4.tar.gz rgu34crnentrezgcdf_11.0.1.tar.gz rgu34crnentrezgprobe_11.0.1.tar.gz	rgu34crnentrezg.db_11.0.4.zip rgu34crnentrezgcdf_11.0.1.zip rgu34crnentrezgprobe_11.0.1.zip
Rattus norvegicus ragene10stv1	ragene10stv1rnentrezg.db_11.0.4.tar.gz ragene10stv1rnentrezgcdf_11.0.1.tar.gz ragene10stv1rnentrezgprobe_11.0.1.tar.gz	ragene10stv1rnentrezg.db_11.0.4.zip ragene10stv1rnentrezgcdf_11.0.1.zip ragene10stv1rnentrezgprobe_11.0.1.zip
Rattus norvegicus raex10stv1	raex10stv1rnentrezg.db_11.0.4.tar.gz raex10stv1rnentrezgcdf_11.0.1.tar.gz raex10stv1rnentrezgprobe_11.0.1.tar.gz	raex10stv1rnentrezg.db_11.0.4.zip raex10stv1rnentrezgcdf_11.0.1.zip raex10stv1rnentrezgprobe_11.0.1.zip
Rattus norvegicus htratfocus (GeneTitan plates)	htratfocusrnentrezg.db_11.0.4.tar.gz htratfocusrnentrezgcdf_11.0.1.tar.gz htratfocusrnentrezgprobe_11.0.1.tar.gz	htratfocusrnentrezg.db_11.0.4.zip htratfocusrnentrezgcdf_11.0.1.zip htratfocusrnentrezgprobe_11.0.1.zip

Contact:

Dr. Philip de Groot PhD
Nutrition, Metabolism and Genomics group
Division of Human Nutrition
Wageningen University
PO Box 8129
6700 EV Wageningen
The Netherlands
Phone: +31-317-485786
Fax: +31-317-483342
Philip.deGroot@wur.nl

Additional information:
Nutrigenomics Consortium
TI Food & Nutrition
Wageningen University

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(This page is last modified on 28 October 2009).